Quick Start¶

Quick Start Flow¶

Quick Start Flow

Get started with qpx in a few simple steps: from installation to data conversion, transformation, and visualization.

Installation¶

pip install qpx

Basic Usage¶

# View available commands
qpxc --help

# Convert MaxQuant data
qpxc convert maxquant-psm \
    --msms-file msms.txt \
    --output-folder ./output

# Transform to absolute expression
qpxc transform ae \
    --ibaq-file ibaq.tsv \
    --sdrf-file metadata.sdrf.tsv \
    --output-folder ./output

# Generate visualizations
qpxc visualize plot ibaq-distribution \
    --ibaq-path ./output/ae.parquet \
    --save-path ./plots/distribution.svg

View complete CLI documentation →